Package index • anglemania

Main

The two functions for running anglemania.

create_anglemania_object(): Create an anglemania_object from a Seurat Object

anglemania(): Compute Critical Angles Between Genes Across Samples in an anglemania_object

Computation of Statistics

Functions that work behind the scenes of anglemania to get the statistics.

factorise(): Factorize Angle Matrices into Z-Scores

extract_angles(): Calculate cosine angle between genes

Utilities

anglemania utilities.

sparse_to_fbm(): Convert a sparse matrix into a file-backed matrix (FBM)

get_dstat(): Compute mean and standard deviation of the correlation matrix

big_mat_list_mean(): Calculates the mean for each element of a matrix from a list of FBMs

get_list_stats(): Calculate statistical measures from a list of FBMs

extract_rows_for_unique_genes(): Extract Unique Genes from Gene Pairs Data Frame

select_genes(): Select Genes Based on Statistical Thresholds from an anglemania_object

integrate_by_features(): Integrate Samples in a Seurat Object Using Selected Features from anglemania_object Object

integrate_seurat_list(): Integrate a List of Seurat Objects Using Selected Features

Anglem Object Helpers

Helper functions to access and set anglem object attributes.

anglemania_object-class anglemania_object: anglemania_object - Class for Storing and Processing Gene Expression Data

show(<anglemania_object>) matrix_list() `matrix_list<-`() dataset_key() batch_key() data_info() angl_weights() `angl_weights<-`() list_stats() `list_stats<-`() intersect_genes() `intersect_genes<-`() get_anglemania_genes() add_unique_batch_key(): Display Summary Information for an anglemania_object