Reference

All functions

BSmeth2Probe()

A function to map WGBS methylation data to Illumina Probe IDs

HumanCellTypeMethAtlas

The comprehensive human methylome reference atlas

IlluminaMethEpicB5ProbeIDs

A dataset Illumina probe IDs of 400000 genomic loci (identified using the “seqnames”, “ranges”, and “strand” values).

deconvolute()

A function to deconvolute of bulk samples to their origin proportions using data from reference atlas (e.g. methylation signatures) Results of model are returned in dataframe "results". Summary of partial R-squared values of model (min, median, mean, max) are printed upon completion.

findSignatures()

A function to construct a signature matrix

simulateCellMix()

A function to generate a dataframe of mixed cell-type origin simulated samples using given reference atlas.